That isn't really true- its a statistical model- and many are skeptical about the results. The model grades plays- no human interface. Misses a deep open route for a TD and throws to the short guy or 5 yard run instead. Yips on an easy throw that could have been a game winning throw. All you need is a TD to win or tie- drive stalls. Clutch plays. Tough to put that into a SAS algorithm. Like everyone Im rooting for him and he looks improved but youre putting the cart before the horse here.
https://www.hogshaven.com/2018/3/13/16839982/5-oclock-club-difference-nfl-passer-rating-and-quarterback-rating-redskins-alex-smith-kirk-cousins
It is actually true. It is possible to assign a numeric value to the performance on each play and aggregate that across whatever timeframe is desired.
And, again, you don't actually know what they are doing or not doing. You're making more assumptions to fit your narrative. All the examples you listed are almost assuredly taken into account - it would be stupid to go to all that work and not take them in to account. But it makes you feel better to assume you know more than they do so you assume that you are the only one capable of seeing those things.
You may disagree with the accuracy. That's fine. But you continue to insist things are "wrong" or "not true" when what you really mean is "I don't like it." That's a pretty straight-forward distinction that you refuse to acknowledge.