You would've had to have seen Star Wars - The Clone Wars to get the basis behind the theory.I don't know that they can control minds if that is the only evidence along with the jedi mind trick.
I think the clones obeying the order was because it was their duty as soldiers to obey orders. I never got the impression any mind control was used.
"According to recently launched Star Wars: The Clone Wars - The Lost Missions (Unfinished Season 6), it was an inhibitor chip embedded inside clones' brains which made the clones anti-Jedi at the time of Order 66.
The inhibitor chip belonged to Count Dooku and Lama Su agreed for this implant under a secret Protocol 66 which was a fail-safe against rogue Jedi."
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